miRBase: the microRNA database The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).

If you use this database, please cite: Ludwig, Nicole, et al. Distribution of miRNA expression across human tissues. Nucleic acids research 44.8 (2016):

MicroRNAs (miRNA) are approximately 21 nucleotide-long non-coding small RNAs, which function as post-transcriptional regulators in eukaryotes. miRNAs play essential roles in regulating plant growth and development. In recent years, research into the mechanism and consequences of miRNA action has mad … PMRD: Plant microRNA Database Welcome to MirGeneDB2.0 - the curated microRNA Gene Database. MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish. miRDB is an online database for miRNA target prediction and functional annotations.

Microrna database

A collection of microRNAs/ Feb 26, 2019 MicroRNA Profiling. MicroRNAs, or miRNAs, are small RNAs that regulate gene expression after transcription has taken place. This occurs in Sep 18, 2018 MicroRNAs (miRNAs) are small, short non-coding RNAs that bind to specific messenger RNAs (mRNAs) and regulate gene expression either Query the complete- and chromosome-level NCBI Genome database ( Prokaryotes) with your own genomes to identify the most closely related complete SCA® dataShare connects the Sperm Class Analyzer CASA System with any LIS or database system: HL7, server shared database, automatic export, custom MicroRNA publishers letters full-length research review articles drug clinical trial studies and thematic issues on all aspects of microRNA research. Nov 24, 2020 “A unified and publicly available database like the RCSB PDB didn't exist during the spanish flu nor the bubonic plague … it enables scientists May 8, 2017 A specialized database for immune miRNAs is highly desirable to demonstrate the immune miRNA disease associations in the interactome. microRNA Discovery & Profiling.

SSEARCH is useful for finding a short sequence within the library of miRNAs (for instance, find a short motif in a miRNA or precursor stem-loop, or find mature sequences that are … Welcome to the plant microRNA database (PMRD) homepage! MicroRNAs play an essential role in regulating plant growth and development and recently research in microRNAs has made great progress. With whole genome sequence available in the plants such as Arabidopsis thaliana , Oryza sativa , Populus trichocarpa , Glycine max , etc., it is necessary to develop a plant microRNA database.

Owing to the biological significance of miRNAs, miRTarBase was developed to provide comprehensive information on experimentally validated miRNA-target interactions (MTIs). To date, the database has accumulated >13,404 validated MTIs from 11,021 articles from manual curations.

To date, the database has accumulated >13,404 validated MTIs from 11,021 articles from manual curations. Welcome to PmiREN. PmiREN (Plant miRNA ENcyclopedia) is a comprehensive functional plant miRNA database.

En oncomir (även oncomiR ) är ett mikroRNA (miRNA) som är associerat med cancer . miRCancer : microRNA Cancer Association Database.

Distribution of miRNA expression across human tissues. Nucleic acids research 44.8 (2016): The arsenal of DIANA Tools ranges from target prediction algorithms (microT v4 and microT-CDS), databases of experimentally verified miRNA targets on as downloadable files.

miRWalk 2.0 Owing to the biological significance of miRNAs, miRTarBase was developed to provide comprehensive information on experimentally validated miRNA-target interactions (MTIs). To date, the database has accumulated >13,404 validated MTIs from 11,021 articles from manual curations. The plant miRNA database (PMRD) integrates available plant miRNA data deposited in public databases, gleaned from the recent literature, and data generated in-house. This database contains sequence information, secondary structure, target genes, expression profiles and a genome browser. miRandb: a Resource of Online Services for miRNA Research, Aghaee-Bakhtiari SH, Arefian E, Lau P.Brief Bioinform. 2017 Jan 3. pii: bbw109.
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doi: 10.1093/bib/bbw109 Highlights: miR2Disease is a manually curated database that provides a comprehensive resource of microRNA deregulation in various human diseases. The current version documents 1939 curated relationships between 299 human microRNAs and 94 human diseases by reviewing more than 600 published papers. PmiREN (Plant miRNA ENcyclopedia) is a comprehensive functional plant miRNA database. In current version, PmiREN contains 20388 miRNA loci (MIRs) belonging to 5757 families, 1365 clusters, 1668 syntenic blocks and 141327 predicted miRNA-target pairs in 88 species phylogenetically ranging from chlorophytes to angiosperms.

miRDB is an online database for miRNA target prediction and functional annotations. All the targets in miRDB were predicted by a bioinformatics tool, MirTarget, which was developed by analyzing thousands of miRNA-target interactions from … Owing to the biological significance of miRNAs, miRTarBase was developed to provide comprehensive information on experimentally validated miRNA-target interactions (MTIs).
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Search method: BLASTN SSEARCH. Choose BLASTN to search for a miRNA homolog in a longer sequence. SSEARCH is useful for finding a short sequence within the library of miRNAs (for instance, find a short motif in a miRNA or precursor stem-loop, or find mature sequences that are related to your query). E-value cutoff:

We are introducing an easy-to-follow classification of available resources that can facilitate and expedite selection of appropriate resources for microRNA-related bioinformatics tools. Convenient and user-friendly resource classifications presented here could assist researchers from different fields to perform faster and more PMRD: Plant microRNA Database MicroRNAs (miRNA) are approximately 21 nucleotide-long non-coding small RNAs, which function as post-transcriptional regulators in eukaryotes. miRNAs play essential roles in regulating plant growth and development.